linux - How to install rgdal and rgeos package in R on university high performance computing system? -

-

i have been installing r packages tar.gz type files on edinburgh university's compute , data facility high performance computing cluster accessed via ssh. once logged in, can install files example below:

install.packages("/exports/work/eng_antonyhydrodata/pkges/deoptim_2.2-3.tar.gz",rpeo=null,target="source")

there approximately 40 packages , 38 of them install no problem, 2 fail: rgeos (rgeos_0.3-14.tar.gz) , rgdal (rgdal_1.0-7.tar.gz).

the reason failure given below:

installing package '/exports/work/eng_antonyhydrodata/library' (as 'lib' unspecified) inferring 'repos = null' 'pkgs' * installing *source* package 'rgdal' ... ** package 'rgdal' unpacked , md5 sums checked configure: cc: gcc -std=gnu99 configure: cxx: g++ configure: rgdal: 1.0-5 checking /usr/bin/svnversion... yes configure: svn revision: 559 checking gdal-config... no no configure: error: gdal-config not found or not executable. error: configuration failed package 'rgdal'

note rgeos gives same reason i.e. gdal-config missing.

i have looked around net , have found various answers problem suggests install libgeos-dev or similar using command 'sudo' or 'apt-get' neither of these commands recognised computing cluster system.

any in getting rgeos , rgdal work appreciated.

antony

i managed solve first installing geos-3.5.0.tar.bz2 package , issuing following linux commands:

tar xjvf geos-3.5.0.tar.bz2 cd geos-3.5.0 ./configure --help mkdir /exports/work/.... ./configure --help, ./configure --prefix=eng_a... --enable-python make make check make install

and similar rgdal


Comments

Post a Comment

Popular posts from this blog

javascript - Chart.js (Radar Chart) different scaleLineColor for each scaleLine -

-
Image
i try , create radar chart using chart.js has various colours each scaleline, or coloured between scalelines. wondering if possible? from: to: i have working graph, though there doesn't seem method change individual scale lines. kind regards leigh you can extend radar chart type this, so chart.types.radar.extend({ name: "radaralt", initialize: function (data) { chart.types.radar.prototype.initialize.apply(this, arguments); var originalscaledraw = this.scale.draw; var ctx = this.chart.ctx; this.scale.draw = function () { var linewidth = this.linewidth; // bypasses line drawing in originalscaledraw this.linewidth = linewidth; originalscaledraw.apply(this, arguments); ctx.linewidth = this.linewidth; var scale = this; // draw chart.helpers.each(scale.ylabels, function (label, index) { // color of ...
Read more

apache - Error with PHP mail(): Multiple or malformed newlines found in additional_header -

-
suddenly have started receiving above error without changes having been made script. host 1and1 (i know...) the script still works fine on different server, , suspicion there must have been server config change has lead this, although hosts plead ignorance. there's no information on above error @ in google can find - have ideas? server running apache if helps. had similar problem. came out of blue. no php code changed. what changed: php upgraded 5.5.25-1 5.5.26. a security risk in php mail() function has been fixed , newlines in additional_headers allowed no more. because newlines mean: starts email message (and surely don't want inject newlines through headers followed evil message). what have worked fine, e.g. having newlines after headers or passing whole message additional_headers , function no more. solution : sanitize headers. no multiple newlines in additional_headers argument. these count "multiple or malformed newlines":...
Read more

java - Android – MapFragment overlay button shadow, just like MyLocation button -

-
Image
i'm struggling add shadow custom overlay button on google map. goal make custom button google's mylocation button. here's how app looks now: layout.xml <relativelayout xmlns:android="http://schemas.android.com/apk/res/android" xmlns:tools="http://schemas.android.com/tools" xmlns:map="http://schemas.android.com/apk/res-auto" android:layout_height="match_parent" android:layout_width="match_parent" style="@style/apptheme"> <fragment android:layout_width="match_parent" android:layout_height="match_parent" android:id="@+id/map" tools:context=".mapsactivity" android:name="com.google.android.gms.maps.supportmapfragment" android:layout_alignparentend="true" android:layout_alignparentstart="true" android:layout_alignparentbottom="true" ...
Read more